2008-9-24 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-16. * coefplot: 1. add the pch.pts option 2. fix mar error. 2008-8-19 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-15. * sim: coerce bhat in sim.mer into a matrix to suit the use of mvrnorm 2008-7-27 Yu-Sung Su * coefplot: add options plot=TRUE, epsilon, add=FALSE into BUGS method 2008-7-22 Yu-Sung Su * R/bayesglm: new option "Warning" to turn off the error message of no convergence and separation 2008-7-22 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-14. * make all internal function start with . * add keyword manip to the docs * export logit(x) for use. * man/balance: doc for balance(). * man/residual.plot: new function(). * man/array.append: doc for array.append * man/sigma.hat: add ... option * man/se.coef: add ... option * R/array.append: new function to add array to the existing one. * R/coefplot: fix when plot=FALSE, should not plot varnames. * R/balanceplot: obsolet! * R/balance: new function that computes, print and plot the balance stats * R/residual.plot: new function(). * R/sigma.hat: add ... * R/se.coef: add ... 2008-7-16 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-13. * R/bayespolr: fix a bug in gmin 2008-7-16 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-12. * R/bayespolr: rep start values to have the same length of coef + zeta 2008-7-15 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-11. * R/coefplot: add options add=TRUE and epsilon=.1, so coefplot can plot over the existing plot. 2008-7-10 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-10. * man/rescale: fix a typo in the example: full2 -> full * R/rescale: fix a bug; 2008-7-9 Andrew Gelman * R/bayesglm: for gaussian family, dispersion <- var(y)/10000 2008-6-23 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-9. * R/se.coef: remove trick to show the coef names * R/bayesglm: scaled=TRUE --> * sd(y) / sd(x) 2008-6-23 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-8. * R/Bayesglm: Clean up redundant code. 2008-6-5 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-8. all the lmer2 class-related methods are now mer-class methods. all the mer-class methods are obsolete mcmcsamp is obsolet because it is not working in lme4 2008-6-4 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-7. * R/traceplot: add mcmc.list method (previously was mask by traceplot generic. 2008-6-4 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-6. * R/traceplot: 1. make it a generic 2. traceplot.bugs --> S4 method 2008-5-1 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-5. 2008-4-12 Yu-Sung Su * R/bayesglm.h: 1. fix a bug in print for bayesglm.h 2. add show for bayesglm.h * R/coefplot: add a stop message for varnames 2008-4-11 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-4. * man/terms: terms.Rd is obsolet! * R/bayesglm: terms.object -> terms * R/bayesglm.h: use model.matrix.bayes.h; terms.object -> terms * R/model.matrix.bayes: 1. no longer a S4 method. 2. add model.matrix.bayes2 for bayesglm.h * R/terms: terms.bayes is obsolet! 2008-4-10 Yu-Sung Su Masanao Yajima * man/traceplot.bugs: add help file of traceplot.bugs(). * R/rescale: if !is.numeric(x.obs) coerce x.obs into numeric * R/sim: fix a naming issue for group levels in lmer object. * R/traceplot.bugs: add traceplot.bugs(). 2008-2-18 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-3. 2008-2-17 Yu-Sung Su * R/coefplot: add extra margin to the margin ``k=1/n.x" 2008-2-11 Yu-Sung Su * R/mcplot: object check: either matrix or data.frame 2008-2-9 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-2. * NAMESPACE: export new print & show methods for bayespolr & bayesglm * Man/bayespolr: add more descriptions on prior.counts.for.bins * R/AllInternal: round fix becomes internal * R/bayespolr: fix a bug when no predictor is in the model * R/balanceplot: smart magining. * R/coefplot: smart magining. * R/mcplot: smart magining. 2008-2-7 Masanao Yajima Yu-Sung Su * Man/multicomp.plot: description for MC.plot * R/multicomp.plot: add a new plot function: multiple comparison plot. 2008-1-12 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-1. * R/se.coef: fix naming in se.fixef 2008-1-9 Yu-Sung Su * DESCRIPTION: change GPL (version 2 or later) to GPL (>=2) * R/mcsamp: fix naming rule in mcsamp * R/terms: fix code and doc inconsistency * man/coefplot: fix description of varidx 2008-1-4 Yu-Sung Su * DESCRIPTION (Version, Date): 1.1-0. * R/se.coef: 1. fix list names for se.ranef. 2. clean up se.coef.mer & se.coef.mer2